Sorry if I seem to be resurrecting an old thread, but I am having practically the same problem. In my case, it's with overclocking. Below is a list of my specs:
Mobo: GA-990FXA-UD3 R3.0
CPU: Phenom II X2 555/X4 B55
GPU: Powercolor HD 7770
PSU: FSP Hexa 500W
Case: Thermaltake V4 Black
I don't wanna go into the story of how I got to the point of my problem, as I've detailed it in many other forums (to no avail). To make a long story short: the UD3 absolutely FORBIDS me from running my 555 unlocked to 4 cores. I've done practically everything I believe possible (some of it not totally recommended for long-term operation): I've ramped the CPU voltage up +300mV, tried raising NB freq. up to 2600MHz (at 2800 I need to bump the voltage up +100mV which leads to a BSOD as I'm guessing the heatsink isn't doing a very good job of things), kept everything else strictly on Auto settings.
I just bought this board, and from day 1 I've been totally disappointed with it. What's worse, I can't RMA it because a) I'm in the Philippines and b) it's a problem related to OCing, in other words the board works (but in a very inefficient way) at stock settings. This is my first mobo from Gigabyte. I really want to love it, but the way things look, it will also be my last.