From the Specifications:
(Note 3)
The PCIEX8_1 and PCIEX8_2 slots share bandwidth with the PCIEX16_1 and PCIEX16_2 slots respectively. When PCIEX8_1 is populated with an expansion card, the PCIEX16_1 slot will operate at up to x8 mode; when PCIEX8_2 is populated with an expansion card, the PCIEX16_2 slot will operate at up to x8 mode.
You are correct, and I believe if you have a GFX card in PCIEX16_2 you can only use a GFX card in the PCIEX8_2 slot. If no graphics card is in PCIEX16_2, you can use the PCIEX8_2 slot for anything you like.