Hi there collidingstar,
I have to own up and say I am not too savvy with RAID although I have played with it a bit I have always found it gave me more trouble than anything else.
Looking through the User's Manual (page 85 - 90), I think in your situation you would need to use the GSATA2 ports for your RAID1 Array. I'm not sure if you will be able to re-build this or, if you would have to start over again.