Please provide your full systems specs. ALL devices.
Tell us about the fans you have plugged in. Are they 3 pin or 4 pin. What headers are they connected to? Are you using splitters of any sort?
Do you have any fan profiles set in BIOS? Are you using Fan Expert 5 in the OS? (with profiles?)
Are you using ANY fan management software.. over clocking utilities for CPU or GPU? Afterburner, SpeedFan, Precision, etc?
Can you confirm that all devices in Device Manager are detected and installed correctly? The more info you can provide, the easier it might be for us to help.