Hey guys,
So I tried what dmdliks suggested and removed the USB 3.0 header from the mobo but doing so did not cause the the USB 3 ports at the back to gain functionality. I tried with 3 different types of devices, Pen drive, Headset, USB cable.
And as expected, the ports at the back made the pen drive light up for a second, as if it powers up but nothing after that. And the front case ports just didn't receive power.
I honestly don't know what could go wrong other than driver issues. It was working perfectly until I re imaged the computer. I might try to do that again as I don't have anything important on the computer (everything is still backed up).
Will update you guys when it is done.
Thanks,
Daniyal