I unplugged the PC speaker. The sound isn't coming from the motherboard or computer. It's coming from a little round black speaker or pizzio speaker just in front of the water level sensor or fill spout for the cooling system. I have a small fan that is mounted over near the CPU that is plugged into the main system fan connector and the rear fans are plugged into the aux. fan connector. I've experiment with changing these all around. I don't think any of the beeps are caused by the system that I can tell. I've disabled all the alarm warnings for temperature. in the PC Health part of the Bios. Like I said in the original post, if I unplug the power connector for the liquid cooling system that powers the pump then the beeping stops.