Hi there,
the easiest way of testing the second PCIE slot is to just use a single Graphic card in that slot and set the Init First Display to PEG1.
When it comes to running Crossfire with BF3, the problem could be due more to the drivers and the game programming, rather than the actual hardware.
Well the second pci slot seems to be working. I just made the change in my bios to peg1 and it booted into windows. I decided to hop in BF3 to test it out and my frames were extremely low just as they are in crossfire only getting 10-20fps and the computer was really slow and fidgity when trying to load the game. I also tried COD Black Ops and same results. Normally when I try to get into a COD server it almost instantly loads up, this time it took about 1 minute to load.
Here is my board
http://www.gigabyte.com/products/product-page.aspx?pid=3263#sp click details and this is a little tid bit I found.
(Note 3) For optimum performance, if only one PCI Express graphics card is to be installed, be sure to install it in the PCIEX16 slot. The PCIEX8 slot shares bandwidth with the PCIEX16 slot. When PCIEX8 is populated with a PCI Express graphics card, the PCIEX16 slot will operate at up to x8 mode.
Could this be my problem? Could this be creating a bottleneck when both cards are running at 8x? I wouldnt think so but i'm out of ideas. Could this simply be a driver issue? Is there some magical thing I need to do to get crossfire to work properly? I've tried both 11.10 and 11.11 CCC drivers and same results with both. I also have the most current application 11.11cap1 installed as well.
Please help! I dont know what else to do to get this working.