Similar issue, slightly different description: CPU fan runs continuously at 100%, despite any changes in BIOS. It sounds similar to the issues that GA-78LMT-USB3 v4.1 had with BIOS F2, corrected in F4. Please review to determine if root cause is same & address appropriately.
Motherboard: GA-78LMT-USB3 v5, BIOS FA
Processor: AMD Phenom II x4 820, RAM: 16Gb (4x4Gb 1333), Graphics: On-board
Operating System: vSphere ESXI v5.5.0
Regards, jadik